Archetype® Software

 

Empowering metadata

  • Compound screening profiles
  • Fermentation records
  • Protein expression purification records
  • Genomic databases
  • Omics information
  • Patient medical history
  • Clinical trial data

Automated annotation pipeline

  • Any genomic data
  • Scalable data storage
  • Pathway identification
  • Comparative genomics
  • Transcriptome analysis
  • Metagenomics

Integrated design platform

  • World-class genomic toolbox
  • Integrated genomic analysis in a single platform
  • Custom visualization “apps”
  • Genotype to phenotype predictions
  • High-level statistical analytics
  • Advanced Machine Learning

 

 

The basics

The basics

  • A web-based tool facilitating access to data on-the-go
  • Automated sequence annotation for both model and non-model organisms using the latest, high quality sequence annotation databases
  • Genome-centric database with storage capabilities for hosting multiple sequences and genomes to enable rapid sequence retrieval and complex data mining

 

Integrated collection of data and tools

Data

  • Metagenomes
  • Microbial genomes
  • Public genomes
  • Eukaryotic genomes
  • Metadata
  • cDNAs

Tools

  • Automated gene annotation
  • Comparative genomics
  • Transcriptomic analysis
  • Pathway mining
  • Integration of metadata
  • SNP analysis

Integrated collection of data and tools

 

Genome and metagenome discovery your way

Genome and metagenome discovery your way

  • Landing page summary. Customized visual summaries of genomes and metagenome classifications and characterization
  • Powerful search. Customized data menus, genome search and regulatory element finder
  • Gene discovery. Sequence annotation and browsing made easy with access to sequence classification from reputable databases
  • Data analysis modules. Access to pathway annotations, BLAST sequence similarity search, and custom data analysis apps
  • Genome browser. Embedded browser with gene annotation data tracks

 

Comparative metagenomics

  • Fully integrated 16s/ITS pipeline and analysis suite
  • Based on the Archetype® database of proprietary metagenomic datasets
  • Easy-to-navigate keyword searches
  • Perform differential abundance analysis between samples
  • Uses novel, iterative assembly approaches to inform important discoveries from complex environmental datasets

Comparative metagenomics

 

Genotype to phenotype analyses

Genotype to phenotype analyses

  • Fully automated SNP/INDEL analysis pipeline
  • Compare mutant to wild type reference genomes
  • Integrate metadata to establish genotype to phenotype relationships
  • Identifiy synonymous and non-synonymous mutations
  • Track insertions of genes or deletions within the genome

 

Transcriptomics at your finger tips

  • Link transcript expression to condition specific phenotype from RNA-sequencing data
  • Compare transcript expression between/across conditions to identify transcripts/gene sets, regulatory elements of interest using SGI’s fully automated RNA-seq analysis pipeline
  • Additional tools for differentially expressed genes, pathway/oncology annotation, and gene visualization

Transcriptomics at your finger tips

 

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